rs253113959 SNP Detail

Summary

• ID
  rs253113959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAAAG AGTGTGAATC
  AGTCACTACT GGAACTGCAC AAACTGGCTA CTGACAAGAA TGATCCCCAC GTGAGTATCG
  GAAACGTGGG ATGAGTGGAG GAGATGATTT GCCGCAGGAC TTGGGAGAGC TGACCAGTAA
  CTTTGTCCCA TGTTCTCTTT CCTAGTTATG TGACTTCATT GAGACGTATT ATCTGAGTGA
  R
  CAGGTGAAAT CCATTAAAGA ACTGGGTGAC CACGTGACCA ACTTACGCAA GATGGGTGCC
  CCTGAAGCTG GCATGGCAGA ATATCTCTTT GACAAGCACA CCCTGGGACA CGGTGATGAG
  AGCTAAGCTG ACTTCCCCAA AGCCACGTGA CTTTACTGGT CACTGAGGCA GTGCATGCAT
  GTCAGGCTGC CTTCATCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401720070	MGP_WTSI_19_10059306	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253113959					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720070	MGP_WTSI_19_10059306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962180 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	358 bp downstream
Cpgi10595	CpG island 10595	1431 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Rr543966	regulatory region 543966	814 bp distal
Rr543967	regulatory region 543967	234 bp distal
Tssr155004	transcription start site region 155004	1964 bp downstream
Tssr155005	transcription start site region 155005	1698 bp downstream
Tssr155006	transcription start site region 155006	597 bp downstream
Tssr155007	transcription start site region 155007	524 bp downstream
Tssr155008	transcription start site region 155008	233 bp downstream
Tssr155009	transcription start site region 155009	87 bp upstream
Tssr155010	transcription start site region 155010	277 bp upstream
Tssr158136	transcription start site region 158136	1876 bp upstream
Tssr158137	transcription start site region 158137	579 bp upstream
Tssr158138	transcription start site region 158138	490 bp upstream
Tssr158139	transcription start site region 158139	197 bp upstream
Tssr158140	transcription start site region 158140	within coordinates
Tssr158141	transcription start site region 158141	41 bp downstream
Tssr158142	transcription start site region 158142	57 bp downstream
Tssr158143	transcription start site region 158143	116 bp downstream
Tssr158144	transcription start site region 158144	273 bp downstream