rs253123374 SNP Detail

Summary

• ID
  rs253123374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56809170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAAACA AACAAACAAA
  CAAAGCAGAA TTTGAAGTTG AATATTCTTT CTTTACAGTG AGTTGAATGA CTTTTGTAAA
  CCAGGGTAGA TGCTGTCAAA CGGAAAGACA GTTTTCTCAG TGAGGCTGCC TGGGCTCCCA
  ACCATCACAG CTTCCTCAGA GAGCTGGGCT GAGTGTTCTG TTCATCACAG TCACTTTCAG
  R
  ACTGAACACA CTAAGGAATC AGCAGCAGCC ATGCTGCCGC ACTGCACAGC ATCAAAGAAT
  AAGTCTTTGG TTCCTGTGTG AAGGAACTAA AGGTTTATGA GTGCCCCTTC TTCTACCACT
  CAGGATTTCA GTCTGGAAAA AAAAAAAAAA ATCAGACTGG GAAATGTCAC CCTTACTCCA
  TGGAACCTGT TCTCAATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859377	CHEV_19_56895228	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253123374					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56809170 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1168 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	899 bp proximal
Rr406045	regulatory region 406045	1379 bp upstream
Rr550140	regulatory region 550140	678 bp proximal
Rr550141	regulatory region 550141	1179 bp proximal
Rr550142	regulatory region 550142	1442 bp proximal
Tssr157215	transcription start site region 157215	1190 bp upstream
Tssr159886	transcription start site region 159886	1342 bp downstream
Tssr159887	transcription start site region 159887	1423 bp downstream