rs253135387 SNP Detail

Summary

• ID
  rs253135387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144037756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGCCCG GGCCGCGCCA
  CTTCCGCAAA CAGGTGCAGG TGAGCGGAGC CCGGGGGCTG CGGGGCCGCT GCGTCTTGCG
  GGGCGGCGGC GAGGGCGGCG GGCTTGCGGG GTTGGGCCAC CTCTGCGGCG GATCGGAGGC
  CTGCCGAGGG CAGGAGGCCG CGGGATGCCC GCGATCTCAG GGAGATTTCT TGCCGCAGGG
  R
  CGTGGGATGG GGGGCGGGGG CGCGGCGACA CGGTGGGGGT TGGGGAAGAC GGCGGGGCGA
  GGTGGCAGCG ATGGGTTCCC CTACCTCCCG GGGGACTCTT TTTCCCGGAC TCTTAAACTT
  GTTGCCCTAA AGGTACCTCC AGCTTCTGTC CTCGACACTT CCTTTTTTTT TTTTTTCTTC
  TTCCAGATGT CACCTGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367029584	MGP_WTSI_5_144861807	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253135387					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367029584	MGP_WTSI_5_144861807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144037756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	within coordinates
Gm71412	predicted gene, 71412	562 bp upstream
Lmtk2	lemur tyrosine kinase 2	within coordinates
Rr111125	regulatory region 111125	956 bp distal
Rr124743	regulatory region 124743	within coordinates
Rr399492	regulatory region 399492	633 bp downstream
Tssr49686	transcription start site region 49686	555 bp downstream
Tssr49687	transcription start site region 49687	542 bp downstream