rs253139413 SNP Detail

Summary

• ID
  rs253139413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTTTGT TACATACGGT
  AAATAGTTCT GAGGACACTC CCAGCTGAGA GCTGGGATTT CTAGAATGCC CTTGAGGCCC
  TGGGAGTCTA GAAGTCTTAA ACCCTGTAAG ATTGTGAAGT GTGGTTTGGA GAGATGGCTT
  GACCTTAAGG GAACGTACTG CTCTTATAGG AGACCTGGGA TCAGTCCCCT GTACCCACAT
  R
  GTGGTATACA TTATAGCTCC AGTTCCAAGG GATCCATCAC CCCCTGCTGG CCTCTGTGGA
  TACTGCACAC ACATGATGTG CACACACATA CAGGTAAGAC ACATAAAATG AAAAGTGCAA
  TCTTAAGATT CTAAAGTGGC CTGGGCCCCA GGATCCCCAA GAGTATATAT TCTTCGCCCT
  CGACCCCCTT CCCTGCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370876322	MGP_WTSI_7_29939192	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253139413					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370876322	MGP_WTSI_7_29939192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853598 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1507 bp upstream
Cpgi18740	CpG island 18740	1126 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	212 bp downstream
Rr400219	regulatory region 400219	1939 bp upstream
Rr644490	regulatory region 644490	34 bp proximal
Rr644491	regulatory region 644491	1017 bp proximal
Rr644492	regulatory region 644492	1529 bp proximal
Rr644493	regulatory region 644493	2000 bp proximal
Tssr65599	transcription start site region 65599	1470 bp upstream
Tssr65600	transcription start site region 65600	1498 bp upstream
Tssr65601	transcription start site region 65601	1571 bp upstream
Tssr71610	transcription start site region 71610	1424 bp downstream
Tssr71611	transcription start site region 71611	1449 bp downstream
Tssr71612	transcription start site region 71612	1544 bp downstream
Tssr71613	transcription start site region 71613	1763 bp downstream
Tssr71614	transcription start site region 71614	1790 bp downstream
Tssr71615	transcription start site region 71615	1999 bp downstream