rs253140793 SNP Detail

Summary

• ID
  rs253140793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62441620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAATAGAC ATCCCAATGG
  GAGAGGTGGG TGAACCCCGG GTACTGAGTC TAATAGGCAT TTCTCCTCTT TCCTTCCTTT
  GTTTGTAGAT TGCTGGGGAG GGAGAGAATC TGTAAGTCCG GCCGGGCTCT GGGCTGGGTC
  TCTGGCTAAA TCCTCAGCTT CCAGCCCGGC AGCCACCCCA CTCCCACCCA CATCTGGGCC
  Y
  GTGGGCGGCT AAGCCACAAG ACAAAACAAC TAAAAACACT GGCTACGGAA GCATCAATGC
  TCATACTGGA GGGGGCCTGG GCGAAGCTAG AGTCCAGCCA GGGGGAGCAG GGTGAGGTCG
  CAATTCACCC TGTGGCGTAA AGCCGCCGAG CGATGGGTGC GAGAGAACCA CGGGGAACTC
  GGGACGCGGG GTTCCGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383609403	MGP_WTSI_11_62364296	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253140793					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383609403	MGP_WTSI_11_62364296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62441620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	within coordinates
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	within coordinates
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	249 bp downstream
Tssr102023	transcription start site region 102023	194 bp downstream
Tssr102024	transcription start site region 102024	15 bp upstream
Tssr102025	transcription start site region 102025	373 bp upstream
Tssr102026	transcription start site region 102026	440 bp upstream
Tssr102027	transcription start site region 102027	468 bp upstream
Tssr102028	transcription start site region 102028	654 bp upstream
Tssr102029	transcription start site region 102029	667 bp upstream
Tssr102030	transcription start site region 102030	699 bp upstream
Tssr102031	transcription start site region 102031	927 bp upstream
Tssr102032	transcription start site region 102032	944 bp upstream
Tssr102033	transcription start site region 102033	962 bp upstream
Tssr102034	transcription start site region 102034	980 bp upstream
Tssr102035	transcription start site region 102035	1054 bp upstream
Tssr108430	transcription start site region 108430	146 bp downstream
Tssr108431	transcription start site region 108431	199 bp downstream
Ubb	ubiquitin B	709 bp upstream