rs253142126 SNP Detail

Summary

• ID
  rs253142126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97143239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTGCCT TCCGATCGTC
  AGCAGAGGCA TCGCCAGTGG GGCCAGGACT GAGAATGGAC GAGTGGGCAC TGCTTTGGCT
  CAGCGTGTTT TTCTGTCTCT TGGCTTTGCA TTTGCATGGG CACGGCGTCA GGTACAGATA
  CAGTAGCACT AGAACTATAC TGGCCACGCA GGCAGCCAGG GTGGTAAAGG CCGTGTTAAA
  Y
  GCCTCGTGGG CGTGGGATCT GTTTATGGTG AAATTGCTCA CGTTGATCAT GATATCCACC
  GTCTCGTTTA ACAGCCGCTG CCTGTTCATT GCGATACAAG AATATACCCC GGCGTCCTCA
  AAGCCAGGGT TCTCTATGAC CAGACTTCCG TTGTAAAACA CACGAAAGTT CCCCATGTCT
  TTATCTGGCT CCAGCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395107794	MGP_WTSI_15_97075789	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253142126					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395107794	MGP_WTSI_15_97075789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97143239 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	within coordinates
Cpgi7615	CpG island 7615	within coordinates
Cpgi7616	CpG island 7616	814 bp proximal
Gm57814	predicted gene, 57814	1735 bp downstream
Pced1b	PC-esterase domain containing 1B	1749 bp upstream
Rr312356	regulatory region 312356	within coordinates
Tssr132851	transcription start site region 132851	319 bp upstream
Tssr132852	transcription start site region 132852	1600 bp upstream
Tssr132853	transcription start site region 132853	1653 bp upstream
Tssr136109	transcription start site region 136109	1884 bp downstream
Tssr136110	transcription start site region 136110	1948 bp downstream