rs253142718 SNP Detail

Summary

• ID
  rs253142718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97794546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGCTAG CCTGGGCTAT
  GTAAGAAGAT CATATTGCAA CACCTTACTG CCATAATTTA GAGAAACATA TGTTAGTTAG
  CCCTACGAAA TGTCTATTGT CAATGACAGT GAGATAGGTC ACCCTCTATG ATGAGTGTTT
  CTTTCCAGAT AAAAAGTTCC GCTACTATAT AGAGAGCAGG GGAGAAGCTA TGAAATTTTA
  R
  AAGCATGTGT ATGTGAATAT ACAGATTTAT TTTTGGTCAA AGTTCACTCA CATTTTTAAA
  ACATAATTAC ATTTGGGCTA AAGTTTCACT ATATATGTAT ATGGATGTCT CTTGCTTCAT
  CCTTTAATTC CAATAATTTA TTATGCATTT CTTAATAGAA ACATGATGAT CCCTTTAACT
  ACTGTATAAT CGAATCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358949053	MGP_WTSI_3_97691153	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	A	A	A	G	A	A	A	G	A	A	A	A	A	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253142718					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	A	A	A	G	A	A	A	G	A	A	A	A	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949053	MGP_WTSI_3_97691153	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97794546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	945 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	1467 bp proximal
Tssr34685	transcription start site region 34685	1398 bp downstream
Tssr34686	transcription start site region 34686	1456 bp downstream
Tssr34687	transcription start site region 34687	1597 bp downstream
Tssr34688	transcription start site region 34688	1681 bp downstream