rs253143517 SNP Detail

Summary

• ID
  rs253143517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGGCAG TGACGTTCTC
  AGTGGGCGGT ACAAAGCCTT GGTTACCTCG TGAGAATGAG GCAGCTGACT CACACGGAAC
  TTACCTAAGC AAAACTTGCT CTACTTGGGA GCTTACAATG CAGCAGAGAA ATGGGAAGCC
  CTTTCCTCAT TGGTAAGAAA TGCAACCCCA CCCATGCACT CCAATCCTAG CACAGGAGGC
  Y
  GAAGGCAGAT GTAAGAGGTC AGCTTAGCCT ATTTATTTAG TTGCAGGACA GGAAGAGCTA
  CAGAACAACC ATCTCCCTAC ATCCCCAAGG TGAGTTGACA CCTACATCAT CTGGGCTAGG
  CCTAACCAAC CAGTTGAATT TTTTTTTTTT GGTTTTTCAA GACAGGTATT TTGTGTAGCC
  TTGGCTGTCC TGGAACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788481	MGP_WTSI_11_69479950	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253143517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788481	MGP_WTSI_11_69479950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557274 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	295 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	488 bp downstream
Gm24029	predicted gene, 24029	1386 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	within coordinates
Tssr102512	transcription start site region 102512	812 bp downstream
Tssr102513	transcription start site region 102513	774 bp downstream
Tssr102514	transcription start site region 102514	744 bp downstream
Tssr102515	transcription start site region 102515	606 bp downstream
Tssr102516	transcription start site region 102516	24 bp upstream
Tssr102517	transcription start site region 102517	54 bp upstream
Tssr108749	transcription start site region 108749	1989 bp upstream
Tssr108750	transcription start site region 108750	1960 bp upstream
Tssr108751	transcription start site region 108751	1931 bp upstream
Tssr108752	transcription start site region 108752	1518 bp upstream
Tssr108753	transcription start site region 108753	1328 bp upstream
Tssr108754	transcription start site region 108754	1128 bp upstream
Tssr108755	transcription start site region 108755	1083 bp upstream
Tssr108756	transcription start site region 108756	1053 bp upstream
Tssr108757	transcription start site region 108757	862 bp upstream
Tssr108758	transcription start site region 108758	623 bp upstream
Tssr108759	transcription start site region 108759	605 bp upstream
Tssr108760	transcription start site region 108760	543 bp upstream
Tssr108761	transcription start site region 108761	372 bp upstream
Tssr108762	transcription start site region 108762	299 bp upstream
Tssr108763	transcription start site region 108763	279 bp upstream
Tssr108764	transcription start site region 108764	777 bp downstream
Tssr108765	transcription start site region 108765	922 bp downstream