rs253150840 SNP Detail

Summary

• ID
  rs253150840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87053381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACACCC CTAGCCATGG
  ACCGCTTCCC ATATATGGCT CTGTCCAAGG TGAGTTCTTA GCCACATCTG AAATGACTGA
  TGGGGATCCA GGGCAAGGGA GGCAGAGAGG CTCGGGTGAA GAAATAAATG TCTGCTTTGA
  GCCCAGTTGG GGGTGTCTCT GTCCCCAGAC ATACAGTGTG GACAGACAGG TTCCAGACAG
  Y
  GCAAGCACGG CCACCGCCTA CCTGTGTGGG GTCAAGACCA ACTACAAGAC CATCGGCGTG
  AGCGCAGCCG CGAGATTCGA CCAGTGCAAC ACCACATTTG GCAATGAGGT CTTCTCAGTG
  ATGTACCGTG CCAAGAAAGC AGGTGAGTTG GAGCCAGGCT CAGCTATGGG GGGCAAGCCT
  AGGGGACTGG ATGTCTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380291	MGP_WTSI_1_89022234	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	C	C	T	T	T	C	C	C	C	C	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253150840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	C	C	T	T	T	C	C	C	C	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380291	MGP_WTSI_1_89022234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87053381 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	1451 bp proximal
Rr17963	regulatory region 17963	1220 bp proximal
Tssr145	transcription start site region 145	685 bp upstream
Tssr146	transcription start site region 146	1929 bp upstream
Tssr7781	transcription start site region 7781	699 bp downstream
Tssr7782	transcription start site region 7782	256 bp downstream
Tssr7783	transcription start site region 7783	29 bp upstream
Tssr7784	transcription start site region 7784	272 bp upstream
Tssr7785	transcription start site region 7785	308 bp upstream
Tssr7786	transcription start site region 7786	338 bp upstream
Tssr7787	transcription start site region 7787	664 bp upstream
Tssr7788	transcription start site region 7788	1066 bp upstream
Tssr7789	transcription start site region 7789	1096 bp upstream
Tssr7790	transcription start site region 7790	1150 bp upstream
Tssr7791	transcription start site region 7791	1274 bp upstream
Tssr7792	transcription start site region 7792	1302 bp upstream
Tssr7793	transcription start site region 7793	1315 bp upstream
Tssr7794	transcription start site region 7794	1332 bp upstream
Tssr7795	transcription start site region 7795	1358 bp upstream
Tssr7796	transcription start site region 7796	1381 bp upstream
Tssr7797	transcription start site region 7797	1398 bp upstream
Tssr7798	transcription start site region 7798	1435 bp upstream
Tssr7799	transcription start site region 7799	1671 bp upstream
Tssr7800	transcription start site region 7800	1690 bp upstream
Tssr7801	transcription start site region 7801	1749 bp upstream
Tssr7802	transcription start site region 7802	1876 bp upstream
Tssr7803	transcription start site region 7803	1937 bp upstream
Tssr7804	transcription start site region 7804	1961 bp upstream
Tssr12838	transcription start site region 12838	59 bp downstream
Tssr12839	transcription start site region 12839	74 bp downstream
Tssr12840	transcription start site region 12840	87 bp downstream
Tssr12841	transcription start site region 12841	1139 bp downstream
Tssr12842	transcription start site region 12842	1465 bp downstream
Tssr12843	transcription start site region 12843	1727 bp downstream
Tssr12844	transcription start site region 12844	1918 bp downstream