rs253153705 SNP Detail

Summary

• ID
  rs253153705
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115437202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCACTGC AGTAGGGTAA CCTGTGTGtt
  ctttttttta agatttattt gtttatttta tgagtacact gtagcgatac acatggttgt
  aagccaccat gtggtgtctg ggatttgaac tcaggacctt tggaagagca gtcagcgctc
  W
  tacccgctca gccatctcac cagccccAAC CTGTGCGTTC TTTAAATAAt tattttggtt
  tttttaatca tgtatgtctg tgtgcatgaa ggcagagatc agaggaatag attccttaga
  gctggagttc tgttgtgaag caactgacac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892530	CHEV_3_115346471	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253153705					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115437202 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	1957 bp upstream
Rr65100	regulatory region 65100	1199 bp proximal
Rr367536	regulatory region 367536	1115 bp downstream
Rr367537	regulatory region 367537	547 bp downstream
Rr397953	regulatory region 397953	939 bp upstream
Tssr35265	transcription start site region 35265	1999 bp upstream