rs253164128 SNP Detail

Summary

• ID
  rs253164128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110791009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT CACTTTATTT TTTTGAGACA
  R
  GGTTTCTTAC TGAATTGAAA GGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195069	CHEV_9_110864445	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253164128					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110791009 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198766	regulatory region 198766	within coordinates
Rr202611	regulatory region 202611	327 bp distal
Rr211512	regulatory region 211512	1661 bp proximal
Tssr87447	transcription start site region 87447	1464 bp downstream
Tssr87448	transcription start site region 87448	1103 bp downstream
Tssr87449	transcription start site region 87449	1067 bp downstream
Tssr87450	transcription start site region 87450	1045 bp downstream
Tssr87451	transcription start site region 87451	1000 bp downstream