rs253169415 SNP Detail

Summary

• ID
  rs253169415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108859740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATGTAG TTGTAACCTG
  TAAGTGAGCA AGTTGAAGGT AATAACATTG CTTAGTTTTG GCCTCCCAGG TTAAATTTTC
  AGTACAGGTG TTGGTGGTTT TTTTGTTTGT TTGTTTGTTG TTTTCCTGTC CATACAAAGT
  TACCTAATAA TGGCTAAGTC TCAGATACTG TTCTGATTGC TTCAGGTAGA GATTCGTTGA
  Y
  CTTATTTTTT GCTAGTTGTT TAACAAATAC TAAATGTATG TGTCAGGTCC CAAACTAGCA
  TTTCTGCACC TTGGCTAAAT ATACTGCAAC AAATAACATT TTATCCAGGG TGGCATACAA
  AGATGATTAA ATTTACAGAG GGAGGATTCA GATATTTAAA AAGTTAAAAT GCGAATAGGG
  TGTGGTAATC CCAGTGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362793982	MGP_WTSI_4_108675148	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253169415					SNP	C	C	C	C	C	C	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362793982	MGP_WTSI_4_108675148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108859740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	1277 bp distal
Nrdc	nardilysin convertase	within coordinates
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	1852 bp downstream
Tssr38326	transcription start site region 38326	1837 bp downstream
Tssr38327	transcription start site region 38327	1679 bp downstream
Tssr38328	transcription start site region 38328	1634 bp downstream
Tssr38329	transcription start site region 38329	1618 bp downstream
Tssr38330	transcription start site region 38330	1542 bp downstream
Tssr38331	transcription start site region 38331	1478 bp downstream