rs253172159 SNP Detail

Summary

• ID
  rs253172159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9928942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAAAGC ACTTTGCAAA
  GAGTAGAGCT TCCAGATACA GGGGAAATTG GTAGCACAGT GACTGTGCCA AAGCTGCCCG
  CTCTGCTCCC TTAAGCTAGA AAAGGCATGC AGACTCAGCC AGCAAGAGCA TACACACAGT
  ACAGTAAGAG GCTGCATTTC CTGTATTTTA GCTGCCTGTT TTCCTACTTA TATGTGATGA
  Y
  CCATCTGCAG GATTAGGAGT ACTGGATGAA ACAGAGGGAA AAGTAAAGAA TCTAAGTTTG
  ATTGAAAATT TGATTCAATT TGATTTAAAT TAATGAGAAC ACAACTATAA ATATGACCAC
  AAGTTTCTAG GGAGAAATAG TTATTTGAAG CAGGGGAAGT AAGTCCCATT CCTAAGATAG
  CTGGCTGAAA GTGTTTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320652230	CHEV_3_9863882	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253172159					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9928942 () rs orientation: forward

Symbol	Name	Function Class
Gm56771	predicted gene, 56771	within coordinates
Rr367411	regulatory region 367411	1921 bp upstream
Rr573524	regulatory region 573524	519 bp distal
Rr573525	regulatory region 573525	1014 bp proximal