rs253185928 SNP Detail

Summary

• ID
  rs253185928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72182120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCACTG CTGAGTGCCT
  ACAAATTCTA GGCCTGAGGC GGCCATGAGC GCCACGGCCT AGCTCAGCCC GGTCCCCGCG
  TGTCCTCGCC GGCTGCTAGG GCCCGGCCGG CCCGGGCCTT CGAGGTCCGC AGCACGGCGC
  ATATGGCCGC GCTCGCCTCC CGCGTTGGCG GGAAGACTGG GAGCGCGGAC GCGCGAGGCC
  R
  ACCCGGAGCC TACCCATGAG GCACTGCGCC CTGGCTCGCG ACAGCCCCCT CCCCCCTCAC
  GGCGCCCAGC AGCCCCGCTC CGCGATGGGA GCCGGAGCGG CCTCGGCGTA CACAGCCCGC
  GCTCCTCCCT CGCCTCCTCC TCTTTCTCCT CCTCCTCAGG GCTCCAGTCA GGCCGAGCCG
  CTCCGCTCAC GGTAAGCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378015310	MGP_WTSI_9_72122645	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253185928					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378015310	MGP_WTSI_9_72122645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72182120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	within coordinates
Gm27253	predicted gene 27253	within coordinates
Rr197186	regulatory region 197186	520 bp distal
Rr206702	regulatory region 206702	within coordinates
Rr368823	regulatory region 368823	517 bp upstream
Tssr85968	transcription start site region 85968	35 bp upstream
Tssr85969	transcription start site region 85969	63 bp upstream
Tssr85970	transcription start site region 85970	103 bp upstream
Tssr85971	transcription start site region 85971	128 bp upstream
Tssr85972	transcription start site region 85972	181 bp upstream
Tssr85973	transcription start site region 85973	649 bp upstream
Zfp280d	zinc finger protein 280D	22 bp upstream