rs253187020 SNP Detail

Summary

• ID
  rs253187020
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130729516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCCTAA AGCACCACTG GGCTTCAGAA
  AGTTCTGGAT GGCCTAGTGA TGTTGGCCTT TATGTGAGCC ATATAAGGAC TTGACACTTT
  GGAAACAGTA GCCTGTGGTG TCAGAATGCT AGCCATGCAG GGAACCTGGA TTTGGTGAAT
  G
  GTAATCAAAC TGGGAACTAA GTGCAGCCAC ACCCTGGGAG AGCCTAGAGA GGACCAGCTA
  AGGCAGGGAA GAGCAGGACT TCCCTTGACA GTAGTCCCCA AGGGAGGGGA CATGGTAAAT
  TGTGGTAGGA AGAGAGCTGG AAGATGTAAG                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319973485	CHEV_1_132698356	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253187020					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130729516 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1086 bp proximal
Tssr8570	transcription start site region 8570	1139 bp downstream
Tssr8571	transcription start site region 8571	1303 bp upstream