rs253187508 SNP Detail

Summary

• ID
  rs253187508
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77788394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGCTTA AGAGTTCTTG
  GGTGGTCCTC TAGCGCTTTC AAAATGTGTC AGGTGAAGAA ACTGCAAAGG GTTCGCCTAG
  GAGGAAAGTG TACTGGATGC AGCAGACAGG TTGGAGAGAT AACTCAGTGG TTTAGGACTT
  TGAAGCCTTC ATATGACTCC TCAGGATCCA TATGATGGAA AGTTGTCACA CACAATAAAA
  A
  AAAAATCCAT ACAGTTTAAA ACAGTGCAGC AGAGGGGCCT GGGCCTGGCA TGCCAAAGAT
  GGCAGGCATG CCCTGGGAAG AGCATGGCTT TTCTCCTGCA GGTCCTGGGG CCGTGGGAGT
  ACATCAATGG CACAAGACTC AGGGGAGTCA GATTCCTAGC TTTCAGAATC CCTCAGATTC
  TGGGTGCCCT GGGACCAGGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394641280	MGP_WTSI_15_77734624	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253187508					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394641280	MGP_WTSI_15_77734624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77788394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1113 bp proximal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	777 bp proximal
Rr505141	regulatory region 505141	1859 bp distal
Rr505142	regulatory region 505142	709 bp distal
Rr505143	regulatory region 505143	238 bp proximal
Tssr131883	transcription start site region 131883	1360 bp upstream
Tssr131884	transcription start site region 131884	1427 bp upstream
Tssr131885	transcription start site region 131885	1840 bp upstream
Tssr135141	transcription start site region 135141	1188 bp downstream