rs253199803 SNP Detail

Summary

• ID
  rs253199803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59910343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCAGTC GTCCCCTGGG
  GAGGATTTTG GTCCTTACAA CTTAGGAATT GAGAGGGTGA TACTACTATG CAGCAGGCAG
  AGGCCAGGGT CACTCCAGAA CATCCTTAGC CAGCCCAAAG CACACAGGTG GCCGGGAGTG
  CCCAGCCACA GTGAGCACGT AGACAAGCTC AGGCTGATCT GTAGAGTCTG GCTGTCTAGG
  R
  TCATGAGCAG CCTGTGTAAG ATTCAAGAGT CTGGGTGCAG TTCCCTGTAG AGCACCTCAC
  TAGTGAGGCC GGGGCTGATT CCTTCCTTGC CAAGGTAAAA ACTAACAAAA CCAAACACCT
  CAATCAATGA AAGCATATAT ACTTGCAACA AAATAAATAC ATTTGTCCCC AGAACAGAAG
  TTTAGCTTTG CTAACTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324358092	CHEV_13_59863890	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253199803					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59910343 () rs orientation: forward

Symbol	Name	Function Class
Gm49354	predicted gene, 49354	within coordinates
Isca1	iron-sulfur cluster assembly 1	within coordinates
Rr276825	regulatory region 276825	1543 bp distal
Rr281504	regulatory region 281504	257 bp proximal