rs253203104 SNP Detail

Summary

• ID
  rs253203104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87052713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACACCC TGCCATTTTT
  CTCTAACAAG CAGGAGTTCA GTTCAGTTCA CAGGGATGGG GTGGGGCCAG GATGGCCACT
  TTGATCCATG GGAGGGGCGT GGTGTTGTGC AGTTAGGAAC AAAGTCTCCC CCTATTTAAG
  TCCAGGCACT CTGTGCTTTA GTTGATCCCT GGTGTCTCGT GTCTTTGTCT GCTGCTGTCC
  Y
  GCCACCAGCC CCAGCCATGC AGGGCACCTG GGTGCTGCTG CTGCTGGGCC TCAGGCTACA
  GCTGTCCCTT AGTGTCATTC CAGGTAATGA GGCTCCTTCC AATGAACACC CCATTCCCAC
  CCATGGCCCT TCATGCTGAC CCTTCCTCTG CTATTCCCTT GGCCAGTGGA GGAGGAGAAC
  CCGGCCTTCT GGAACAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380274	MGP_WTSI_1_89021566	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253203104					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380274	MGP_WTSI_1_89021566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87052713 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Rr17963	regulatory region 17963	1888 bp proximal
Tssr145	transcription start site region 145	1353 bp upstream
Tssr7781	transcription start site region 7781	31 bp downstream
Tssr7782	transcription start site region 7782	405 bp upstream
Tssr7783	transcription start site region 7783	697 bp upstream
Tssr7784	transcription start site region 7784	940 bp upstream
Tssr7785	transcription start site region 7785	976 bp upstream
Tssr7786	transcription start site region 7786	1006 bp upstream
Tssr7787	transcription start site region 7787	1332 bp upstream
Tssr7788	transcription start site region 7788	1734 bp upstream
Tssr7789	transcription start site region 7789	1764 bp upstream
Tssr7790	transcription start site region 7790	1818 bp upstream
Tssr7791	transcription start site region 7791	1942 bp upstream
Tssr7792	transcription start site region 7792	1970 bp upstream
Tssr7793	transcription start site region 7793	1983 bp upstream
Tssr7794	transcription start site region 7794	2000 bp upstream
Tssr12838	transcription start site region 12838	727 bp downstream
Tssr12839	transcription start site region 12839	742 bp downstream
Tssr12840	transcription start site region 12840	755 bp downstream
Tssr12841	transcription start site region 12841	1807 bp downstream