rs253203170 SNP Detail

Summary

• ID
  rs253203170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155867925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGTCCA TCCCAGGACT
  ACTAAAAATA AAAAGAAATA AGATATTCTA TAAAAATAAA AAGAAACAAG ATATTCTAGT
  TCTAGTATGT ACGAGTCCCA GGAAGAGGAG AAGATAGGAG ACAGGGAGGG AAAGGAGAAT
  GATAATTTAT GCGTAAGTAG GAACATGTTA GTCAAACTGT AGCATGCCAA ATACAAAGAT
  M
  AATCTTAACA TTACCCACAT TGTAAAATGA GCTCGTATTC TGCCACTTGT CTCAAAAGAA
  AGACCCCTGG TCAGAGAATG AGCTCCAGTT CTAGATATGC GCTGATACCT GACCCCGAAT
  GCAAGCTGAG TGCTAGGAGC TGGAGAGATG GCTCAGGGTC CTTTAGAAGA CAGCTGGCTG
  CTCTTCCAGA GGACCCAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442822	CHEV_4_155157577	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253203170					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155867925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	547 bp proximal
Rr606569	regulatory region 606569	677 bp proximal
Rr606570	regulatory region 606570	1177 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	554 bp downstream
Tssr44972	transcription start site region 44972	1430 bp downstream
Tssr44973	transcription start site region 44973	1468 bp downstream
Tssr44974	transcription start site region 44974	1540 bp downstream
Tssr44975	transcription start site region 44975	1554 bp downstream
Tssr44976	transcription start site region 44976	1581 bp downstream
Tssr44977	transcription start site region 44977	1591 bp downstream