rs253217301 SNP Detail

Summary

• ID
  rs253217301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88887955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTTAGG GGAACCAGCG
  CTTAGGATGT TATGCTGGGC AGCCCCAAGC TCATCCCAGC TCCTTTGTAA CAGTATCCTG
  ACCTTCACAA TAAAAATGGA TGTAGGATGC CCCTCTTAGG GCTTCGTAAA GGTGTCTTGG
  TAATATTCTC CATTTGTTTG GCACACAGTA GGTGCCTCAT AAACAATGGC TATTAGATAC
  Y
  ATGAGATATT TACCTTGTCC TTTTGGCTGC TTAACATTGT CATCCAAGGT AAACTCCCAT
  AATCCCTCAA GGAGCTTCTT TCCCACAGTG GAATTTCCCA TCAGACACTC GGATTCTCCT
  GTCCACCCTT CTGTTCTGCA CTCAGCCCAG ATTGCAGGAC TGCCTTACAG AACTAAAAAC
  AATGTAAGCC TAAATGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783664	CHEV_11_88858443	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253217301					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88887955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1968 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr454272	regulatory region 454272	546 bp distal
Rr454273	regulatory region 454273	203 bp distal
Rr454274	regulatory region 454274	352 bp proximal
Rr454275	regulatory region 454275	1411 bp proximal
Tssr110060	transcription start site region 110060	1369 bp upstream
Tssr110061	transcription start site region 110061	596 bp upstream