rs253217879 SNP Detail

Summary

• ID
  rs253217879
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40057924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATCTGCT ACTATCTTAA
  TGCTGCAGAC TTTAGGGTTT AGTGTTAAAG TACAGAGGAA AGTCCTGAAA AACATGTTCT
  GTTTACTCAC AAAGAGGCAT CAACATGGAA ACAACATGGT GTATTATATC TTTATTGTTC
  CTGCATTTTG TTTTCTTTTG TTCTCTTGTT CTGTATTTTC TCCCTTATTA TAACTTGTAC
  W
  AAATATCTCC ATTTCTACTG CAATATTTAG TTTCCAGTAT ACACACACAC ACACATATTT
  AAAATATAAA AGGCAAACAA ATGTAAAGAG CTTTCTAGAA TAAAAATAAG CATTGCTTTT
  TCTTTATGAT CAAAATGTTT TTGTTTAAAA TCGGTAAGCA ATTATTGAAG TAAAGTTTGG
  TTCTCATTCA AATATAAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370426	MGP_WTSI_8_40690237	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253217879					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370426	MGP_WTSI_8_40690237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40057924 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	584 bp downstream
Tssr80996	transcription start site region 80996	301 bp upstream
Tssr80997	transcription start site region 80997	278 bp upstream
Tssr80998	transcription start site region 80998	77 bp downstream
Tssr80999	transcription start site region 80999	141 bp downstream
Tssr81000	transcription start site region 81000	336 bp downstream
Tssr81001	transcription start site region 81001	392 bp downstream
Tssr81002	transcription start site region 81002	406 bp downstream
Tssr81003	transcription start site region 81003	428 bp downstream
Tssr81004	transcription start site region 81004	488 bp downstream
Tssr81005	transcription start site region 81005	509 bp downstream
Tssr81006	transcription start site region 81006	546 bp downstream
Tssr81007	transcription start site region 81007	611 bp downstream
Tssr81008	transcription start site region 81008	721 bp downstream
Tssr81009	transcription start site region 81009	737 bp downstream
Tssr81010	transcription start site region 81010	764 bp downstream
Tssr81011	transcription start site region 81011	842 bp downstream
Tssr81012	transcription start site region 81012	867 bp downstream
Tssr81013	transcription start site region 81013	1035 bp downstream
Tssr81014	transcription start site region 81014	1062 bp downstream