rs253224577 SNP Detail

Summary

• ID
  rs253224577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTATTTA TCCTTCACTG
  TTCATAGACA TTACTTGTGG TCGGGTGAGC TATTCGGGTT TAACTTGGCT AATTTCAGGT
  GATGGCTGTC ACTGCACAAA TCCAAGCACT GACGACAAAA GTTCGAGCTG GAACGTATTC
  TACAGAGAAG GTAAGGGCTC CTGCACAGGC TGGAGGGCCA GCTCCGTGGT TACGTCACCC
  R
  TCCAGGTGAC GTAACCACTT GGATCCCAGC ACTCGTGTCT ACATGACCCA CAATTCTAGC
  TCGGGCATCC CATACACATG TGCCGTGTGA ATGTACATAC ACATAAATAA CTGTAAATCT
  TAAGGGGGGG GTACTTGAAG AGGGAGGACC TCCTCATATG ATGTGCTTGC TGGTTTGGTT
  TGGTTTTTAC TGTAGGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641592	CHEV_14_55636025	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253224577					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	1094 bp distal
Gm63347	predicted gene, 63347	1387 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1994 bp downstream
Rr369831	regulatory region 369831	1565 bp downstream
Rr492392	regulatory region 492392	1724 bp distal
Rr492394	regulatory region 492394	1398 bp distal
Rr492395	regulatory region 492395	906 bp distal
Rr492396	regulatory region 492396	1009 bp distal
Tssr125743	transcription start site region 125743	1617 bp downstream