rs253228226 SNP Detail

Summary

• ID
  rs253228226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55240851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGAT GTCAATTTGA
  AAGGAAAACA TTTGAGCCAC TTGACTCTTA GAAGAGGAAA AAAAAATCAA AAGAATTGGA
  AGAGAATGTG AGGGTATAAA GCCTTTTGTA AAGGGTAAAG TTGGAGCAAG GATGCAGGTT
  TCTTTCATCT TCCATTCAGA AATTCTTAAG AGGAGCCACT TAACAATTGT TGATGTCTCC
  R
  GAGGGAGGAA GGACTTCCGG GTTGTGACAC TCTTAGGGTC TGGAAAGCAT CCTAAAGGCA
  GGGTATGTGG TGACATTAGG AGCATCTCCT ATAAGGGGAG TAGTATGCCT AACCCACTAG
  TATAGCTAGT GGTAGAGCTA TAGTTGACCT AGTCTGTCTC TACGGTCTGC TCCATCGTAT
  AGAAATCTTG GGCGATGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402836595	MGP_WTSI_19_55326909	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253228226					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402836595	MGP_WTSI_19_55326909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55240851 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1596 bp proximal
Rr363563	regulatory region 363563	within coordinates
Rr363564	regulatory region 363564	549 bp proximal
Rr370538	regulatory region 370538	1465 bp upstream
Tssr5558	transcription start site region 5558	576 bp downstream
Tssr157068	transcription start site region 157068	516 bp downstream
Tssr157069	transcription start site region 157069	475 bp downstream
Tssr157070	transcription start site region 157070	456 bp downstream
Tssr157071	transcription start site region 157071	1222 bp upstream
Tssr157072	transcription start site region 157072	1274 bp upstream
Tssr157073	transcription start site region 157073	1481 bp upstream
Tssr157074	transcription start site region 157074	1547 bp upstream
Tssr157075	transcription start site region 157075	1562 bp upstream