rs253229994 SNP Detail

Summary

• ID
  rs253229994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116514052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAAAGCA CCCTTCCACA
  AATGATTTCC ACGAATGCAA GTATCTAATC TGGTGTCTCA GCATGCCTTC AGCCTCTAGG
  CCCTGGGATC CGTTTAAGGT CATTTAAGTA GAGGCCACAT CTGTGGTCTC TGCATTATAT
  AACTAAGCTG TTTGTTCTTG TTGGATATTT GCCAACCATA TGTTAGATCA AGGCCGGTTG
  R
  AACAGTCTCA TTTTGAGAGA CTAAATTGCA AGAGAAATTA GATCTGAAAG GAACACAGAA
  AGAGCCCAAG GAATTGGGAC ACCTGGGAGC CATTAGCAGT AATCAAGGCT TATCCTGTAT
  GAAAACTTGG GAGGGAGATG AGCCCAGCGG AATATACATA TATTTATGTC CATGTAAATT
  GATATATATG AAAATGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323490234	CHEV_10_116115203	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253229994					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116514052 () rs orientation: forward

Symbol	Name	Function Class
Gm26579	predicted gene, 26579	within coordinates
Rr385348	regulatory region 385348	506 bp upstream
Rr439361	regulatory region 439361	within coordinates
Rr439362	regulatory region 439362	844 bp proximal