rs253230000 SNP Detail

Summary

• ID
  rs253230000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:111937041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTGTG GTCACCGCAG
  TGTGTGAGGA CGTGCAGAGG GTCTCACACG GCCCTGACAG CATGTTCTTG AGTTTCATCC
  TCTGACTAGG CTACAGCGAG CTCCTGAAAG ATCCACCCTA TATTCTTGAA GGATGATTTG
  GGTAGCAGTA CAGAAGCTAG CTAGCTCAGA GGGAGCGAGG TAGGGAGCCA GCCCTGACTC
  R
  GTGGAGAGTC AACTGTTCTA TGAACAAGAG TTAGCTTGGA TCGAGGGCAC ATGTTTAACC
  TCCAGGATGA GCCAAACTGT TCCGCTGAGC TCACAGTCTG CTGTTGGCCT GTCTCCTGCA
  GAGGTCAGCA TACAGGGCTG AACGCTCCCT GTCTGAAGGT CCCTGACTCC CAGTTTGCTT
  CTGTGTTCCT GAGCTGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322412429	CHEV_7_119481348	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253230000					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:111937041 () rs orientation: forward

Symbol	Name	Function Class
Mical2	microtubule associated monooxygenase, calponin and LIM domain containing 2	within coordinates
Tssr68564	transcription start site region 68564	1228 bp downstream