rs253238385 SNP Detail

Summary

• ID
  rs253238385
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34687212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCAGAC GGCTCGCCAT
  CGGGAGGAGC AGCGCGCGCC CTCAAGCCCA GGGCTCCGAA CCACAGCCTC GCTCCAGGCA
  GGGACCTGGC CGGCGCCCGG GCGGCTCACT GCACCGGTGT GCGGGTGCAG CCCGCTGCCG
  CTCCCTGCAG GGAGGGCTCG GCCCCCAGAG CCGGCCCGGC CAGCACACCC CGGGCCGCCG
  W
  TCCCTAGCGA CCGCCCGCAG CCCGGCCTCA CCTCTCGCCG GAGCCATGGT GCCGAGAGAG
  TCTGCGGAAC TGACGCCCCT GCGGCCATAG AGACGCACCG GCCTAGAGAG CCCGCCGCAC
  CACACGCGCG AGGAGGAAGC GGGGGCTACG GCGGAAGCCG CGCGGCGTGC GGAGCGACAA
  GTCTGGGAGA CTCGGTCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361143790	MGP_WTSI_4_34634461	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	A	A	A	T	A	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253238385					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	A	A	A	T	A	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361143790	MGP_WTSI_4_34634461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34687212 () rs orientation: forward

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	1347 bp downstream
Cpgi14121	CpG island 14121	within coordinates
Rr100808	regulatory region 100808	within coordinates
Rr398199	regulatory region 398199	11 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	50 bp downstream
Tssr41194	transcription start site region 41194	100 bp downstream
Tssr41195	transcription start site region 41195	135 bp downstream
Tssr41196	transcription start site region 41196	170 bp downstream
Tssr41197	transcription start site region 41197	245 bp downstream