rs253241766 SNP Detail

Summary

• ID
  rs253241766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46923046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTCAT GCAATAGCAT
  GAGGTGAACC TGGCAACAAT TATATTGACC TTTTTTTTTT CCCATTCAAA ATGTTAGCAT
  GATCTACATC TTACCTTAAC CACACTGACC AGTTCTGGAC ACTGAGCAAC AGTGATGGCT
  CTAGTATTTA ACCTTTTAAA AGATTATCTT AAAGCTTTGG GGTATCTTTA AGATTTTTTA
  R
  AATGACGTTT GAAGAAGGGT TACATGCGCA CATGGTAACT CACAGTCCTG AGGATTGAGA
  ATTGCACTTC AGGCTTTGTG ACAGGCATGG GCTTTAACCC AGTGAGCCAT CCTACTGGCC
  TTGCATTGGC CGTTGGTAGC CCTTAAAAGG TTTTCCCAAG GGATTTGTCA AGTCTACAGA
  GCCAAGGCTG AGCAGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534963	MGP_WTSI_8_47555363	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253241766					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534963	MGP_WTSI_8_47555363	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46923046 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	1168 bp upstream
Cpgi20317	CpG island 20317	619 bp proximal
Gm45244	predicted gene 45244	1382 bp downstream
Gm64268	predicted gene, 64268	within coordinates
Rr186591	regulatory region 186591	354 bp proximal
Rr191786	regulatory region 191786	1149 bp distal
Rr368530	regulatory region 368530	547 bp upstream
Tssr2561	transcription start site region 2561	1702 bp upstream
Tssr77199	transcription start site region 77199	1039 bp upstream
Tssr77200	transcription start site region 77200	1072 bp upstream
Tssr77201	transcription start site region 77201	1160 bp upstream
Tssr77202	transcription start site region 77202	1684 bp upstream
Tssr77203	transcription start site region 77203	1710 bp upstream
Tssr77204	transcription start site region 77204	1878 bp upstream
Tssr77205	transcription start site region 77205	1927 bp upstream
Tssr81204	transcription start site region 81204	1597 bp downstream
Tssr81205	transcription start site region 81205	1630 bp downstream