rs253249500 SNP Detail

Summary

• ID
  rs253249500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GACCAGGAAA AGCAGAGAAA
  R
  CATCTGGAAG CAGAGTAGAC ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305831	CHEV_4_128295440	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253249500					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr599982	regulatory region 599982			413 bp proximal
Rr599983	regulatory region 599983			795 bp proximal
Tlr12	toll-like receptor 12			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Tssr43437	transcription start site region 43437			120 bp downstream
Tssr43438	transcription start site region 43438			376 bp downstream
Tssr43439	transcription start site region 43439			413 bp downstream
Tssr43440	transcription start site region 43440			432 bp downstream