rs253250180 SNP Detail

Summary

• ID
  rs253250180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90650921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACTCAC AAGTCTGCTG
  CCCTAGCCCT CAGTCAAAGG AGCTGTTCTT GACCGCAAGC TGAATTAGTG TCCCTTCGTC
  TTTGGGTGTC GCCTCTTTTC CTGCCCTCGT CTTTCTTATT TTTCTTCATT GATTTATCAC
  TATCAAAGAG AGATGACCCA TTTAAGCTTG CGTCTGTCTC CTTAAGAGAG GGGAGGGGAG
  K
  TCTTTTCTCT TACATGGCAT TAGCTCTTCA CTGTTTAAAG CATACCGTAC ACTCTGAAAG
  CATATTTGTT GGATAAATGA ATGGAAATCT TGCCACTGAA AAGCCATAGC GAGACACAAA
  ACAAAGGGGT ATATTTGTAT TGTTCTTCTT TAATTAAAAA TAATTTCACA TGCATGCATG
  CATACATAAG TTTATACCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365837396	MGP_WTSI_5_90932088	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253250180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365837396	MGP_WTSI_5_90932088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90650921 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47139	transcription start site region 47139	1641 bp downstream
Tssr47140	transcription start site region 47140	1626 bp downstream
Tssr47141	transcription start site region 47141	1531 bp downstream
Tssr47142	transcription start site region 47142	1517 bp downstream
Tssr47143	transcription start site region 47143	501 bp upstream
Tssr47144	transcription start site region 47144	607 bp upstream
Tssr47145	transcription start site region 47145	1277 bp upstream
Tssr47146	transcription start site region 47146	1291 bp upstream
Tssr47147	transcription start site region 47147	1832 bp upstream
Tssr47148	transcription start site region 47148	1888 bp upstream
Tssr47149	transcription start site region 47149	1904 bp upstream
Tssr51784	transcription start site region 51784	1529 bp upstream
Tssr51785	transcription start site region 51785	1295 bp downstream
Tssr51786	transcription start site region 51786	1908 bp downstream