rs253254899 SNP Detail

Summary

• ID
  rs253254899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59954175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGGTCC CTGTTAGAAG
  AGATGTAAAT ATGCTGACTG AAAATGACTA CTGGAGACAA AGTTACGCTT TTCCATTCAA
  TTTACTGTGC CTATTTATAT ACTCCTCAGT GAGTGTAGCA TTAAGTAGGG TCATGTGACC
  AGCTCAACTT TTTTTTTTTT TTGGTAAGGT GAAAAACTAT TTTCGACAAA CAAATTTAAA
  Y
  TGTAGTTTTT ATCATTATTT TTATGATGGT TAATAAAGTT TACATCAAAA GACTGTAAAT
  TATCTATTAA AGCTAATTCT GCCTTTTATA TGCTAAACTA CATTTTTTGC CAACCCTTTG
  ACTTTAATAT TCACTACTAA GATGTAAAAG TATCAAGAAT CTGATATTCT GATATTCTGT
  ATAATTCTTT TAAAATGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354152671	MGP_WTSI_2_59961888	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253254899					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354152671	MGP_WTSI_2_59961888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59954175 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	797 bp proximal
Gm13620	predicted gene 13620	1265 bp upstream
Rr396985	regulatory region 396985	within coordinates
Rr396986	regulatory region 396986	247 bp upstream
Rr557596	regulatory region 557596	within coordinates
Rr557597	regulatory region 557597	775 bp proximal
Rr557598	regulatory region 557598	1276 bp proximal
Rr557599	regulatory region 557599	1856 bp proximal
Tssr24181	transcription start site region 24181	1755 bp downstream
Tssr24182	transcription start site region 24182	1776 bp downstream
Tssr24183	transcription start site region 24183	1820 bp downstream
Tssr24184	transcription start site region 24184	1981 bp downstream