rs253256739 SNP Detail

Summary

• ID
  rs253256739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191448792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTGCTT TGTCACAGGT
  TGGGATGGGC CTTGAAAATA CACATGAGCT ACATCCCTAG CATGCCCTGT ACAGTAAAAT
  ATGTTTGTGA ACAGGTAAAG GATAATAATA GCTATAAAGG CTAACATACA TGGAAATTAT
  TTATATATCT ATATCAATAT CATACAGGTT CTGTGTAGAA TAGGAATTAA AAAAATATTT
  Y
  CACATGGCAA AAGGCAACTT GCCTGTCATT CCTGGATCAA AGTTGGAGGA AAGAGAGGGA
  CAGTTTTATC AAAGCATGAA CATTTTTTTG GTTTGATTTT TTTTTTTTTT TTTTGACAAG
  GTCTAGTAGC CTAGGCTGGC CCAGGACTCC TGGCACTCCT GCCTTAGCCT CTCTGGTGCT
  GGGATTATCT ATGAGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352839481	MGP_WTSI_1_193540559	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253256739					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352839481	MGP_WTSI_1_193540559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191448792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	1024 bp proximal
Lpgat1	lysophosphatidylglycerol acyltransferase 1	1154 bp upstream
Rr426207	regulatory region 426207	664 bp proximal
Rr426208	regulatory region 426208	1219 bp proximal
Rr426209	regulatory region 426209	1299 bp proximal
Tssr10776	transcription start site region 10776	1200 bp upstream
Tssr10777	transcription start site region 10777	1313 bp upstream
Tssr10778	transcription start site region 10778	1355 bp upstream
Tssr10779	transcription start site region 10779	1390 bp upstream
Tssr10780	transcription start site region 10780	1575 bp upstream
Tssr10781	transcription start site region 10781	1698 bp upstream
Tssr10782	transcription start site region 10782	1715 bp upstream