rs253257118 SNP Detail

Summary

• ID
  rs253257118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTCAGAC TGCCGAGTCT
  CAAGAGAAGG CTATGGCATG TGAGCTGACG ACAGCTCAGT AAGAGAGCAG CAGTTTTTTA
  AAAGTATTTT TTAATTCATT TATCGTGTAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT AAGAGTGTGC ACACTTGCCA CAGCATAAAT GTGGAGGTCA GTGACAACTT
  R
  CAGGAGTCAG TTCTCTCCTG CCACCAGTGG ACCCCAGAGG TGGAACTCAG GTCACCAGGC
  AACAGACACC TTTACCAACT TGGTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCCTCTTCCT CTTCTCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss354807932	MGP_WTSI_2_90956707	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs253257118					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807932	MGP_WTSI_2_90956707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	920 bp distal
Mybpc3	myosin binding protein C, cardiac	1594 bp upstream
Rr560651	regulatory region 560651	1340 bp distal
Rr560652	regulatory region 560652	1277 bp distal
Rr560653	regulatory region 560653	1104 bp proximal
Spi1	Spi-1 proto-oncogene	791 bp downstream
Tssr18853	transcription start site region 18853	1379 bp downstream
Tssr18854	transcription start site region 18854	1337 bp downstream
Tssr18855	transcription start site region 18855	1160 bp downstream
Tssr18856	transcription start site region 18856	1112 bp downstream
Tssr18857	transcription start site region 18857	996 bp downstream
Tssr18858	transcription start site region 18858	953 bp downstream
Tssr18859	transcription start site region 18859	848 bp downstream
Tssr18860	transcription start site region 18860	1586 bp upstream
Tssr25158	transcription start site region 25158	793 bp upstream