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rs253257205 SNP Detail
Summary
  • ID
    rs253257205
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr10:13841676 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGTCTCTCC CTCTTCCTCC
CTCCCTCCCC TCTCCCCCGC CCGCCCTCGC CGCGCACTCC TCCTAGTAAC TTCTGTTCGG
GGAGGCGCTG CCAGGAATAA CCCGGTGCGT CCACAGCCCG GAGGGGAGGT GGCCGCTGCG
GCTCCCGCAC GCCGACAAAC TGCGGCCCGG GTCCTGCGGC TCAAGCCCCA GCCTAGCGGC
Y
CTGGCCCCCG CCCTGGCTCC ATCTCCTAAC AGTGTCCGAA AATAAATAAA TATATAAATA
AAGACAAGAG GAGCCTGGGC TGGCGGTGGG GATCGCCTCC CTCCCTCCTC CCTCCCTCCA
CGCCCGCCCT CCCTCTGTCC TTAAGGAAAT GCTACCAGAC ACCCCCCACC AGACACGCTC
AGCCTGGGCG AGGAGCAGCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss379498369 MGP_WTSI_10_13685738 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253257205 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss379498369 MGP_WTSI_10_13685738 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:13841676 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
2900084C01Rik RIKEN cDNA 2900084C01 gene within coordinates
Cpgi1318 CpG island 1318 within coordinates
Gm56954 predicted gene, 56954 190 bp upstream
Gm66890 predicted gene, 66890 275 bp downstream
Hivep2 human immunodeficiency virus type I enhancer binding protein 2 143 bp upstream
Rr384171 regulatory region 384171 475 bp downstream
Rr427854 regulatory region 427854 1302 bp distal
Rr427855 regulatory region 427855 201 bp distal
Rr427856 regulatory region 427856 within coordinates
Rr427857 regulatory region 427857 335 bp proximal
Rr427858 regulatory region 427858 458 bp proximal
Tssr3141 transcription start site region 3141 179 bp upstream
Tssr92402 transcription start site region 92402 1285 bp downstream
Tssr92403 transcription start site region 92403 1118 bp downstream
Tssr92404 transcription start site region 92404 1085 bp downstream
Tssr92405 transcription start site region 92405 1057 bp downstream
Tssr92406 transcription start site region 92406 889 bp downstream
Tssr92407 transcription start site region 92407 684 bp downstream
Tssr92408 transcription start site region 92408 653 bp downstream
Tssr92409 transcription start site region 92409 620 bp downstream
Tssr92410 transcription start site region 92410 593 bp downstream
Tssr92411 transcription start site region 92411 93 bp downstream
Tssr92412 transcription start site region 92412 61 bp downstream
Tssr92413 transcription start site region 92413 40 bp downstream
Tssr92414 transcription start site region 92414 161 bp upstream
Tssr92415 transcription start site region 92415 242 bp upstream
Tssr92416 transcription start site region 92416 274 bp upstream
Tssr92417 transcription start site region 92417 307 bp upstream
Tssr92418 transcription start site region 92418 336 bp upstream
Tssr92419 transcription start site region 92419 1045 bp upstream
Tssr92420 transcription start site region 92420 1077 bp upstream
Tssr92421 transcription start site region 92421 1202 bp upstream
Tssr92422 transcription start site region 92422 1889 bp upstream
Tssr96784 transcription start site region 96784 282 bp upstream
Tssr96785 transcription start site region 96785 257 bp upstream
Tssr96786 transcription start site region 96786 818 bp downstream
Tssr96787 transcription start site region 96787 848 bp downstream
Tssr96788 transcription start site region 96788 889 bp downstream
Tssr96789 transcription start site region 96789 1544 bp downstream
Tssr96790 transcription start site region 96790 1701 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory