rs253260366 SNP Detail

Summary

• ID
  rs253260366
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAAGGA GAAAGAAAAA
  TAGGAGCGAT GAACAGAACC AGGCCTCAGG TGCAGAGTCT GCACGCACTA CAATAATTGC
  TCAAAGACTT ACCAAATCCA TGGCAGCAAG ACTGTGACCT GTCTGTCTTT ATTTTTCTCT
  TCAAACCTAG TCAACATGGG GATATGGCGT TCTCTCCTGC AGAGCAGAAC AAATTTTCTA
  M
  ATTTCTAGTG ACACAAGACA CGAGATGATG GAAAATGAAT AGACATATTA CAAGCTTTAG
  ATTTTTTGAT CCAATTCAAA TGAGAATTTT GTAGTTTATG AGTTTAACAG TGGTCAGTAA
  AGTATCTCCA AGTCGCCTCA TGGCATCTAT TGTCCTCTTC TAGAAGTTGG GGACAGTACA
  CTTTGTCTGG GTAATTTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267193	CHEV_2_43409588	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253260366					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444080 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	1261 bp upstream
Rr556278	regulatory region 556278	520 bp proximal
Rr556279	regulatory region 556279	969 bp proximal
Rr556280	regulatory region 556280	1297 bp proximal
Tssr17589	transcription start site region 17589	1253 bp upstream
Tssr17590	transcription start site region 17590	1277 bp upstream
Tssr17591	transcription start site region 17591	1294 bp upstream