rs253263520 SNP Detail

Summary

• ID
  rs253263520
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCCGGA CTCTCGCGGG
  ACCTGGTTGG CAGAGCGGTT GCGCTGGATG GCGGAGCCCC GGGTTCTCGG GGCCCTGGGA
  CCAGTAACTC TTTTCCTGCA GGCAAGTTGT CGGGGAGGGG CCGGGGCGCG CGCCCGGGCG
  CCGGGAGCCT TCGTGCGCGC GCCTCGCCGT CGCCTGCGGC GGTGCAGAGC GGCTGTCGCG
  S
  GCCGCGCTCC TCCCGCCCCC GGGCGCCCGC CACCTGCGGA GACCTCCCCG CCGGCCGCTG
  CCCGGCGCTC GCTCGCCGGC CCGGAGGCCG CTGCCAGCCC GCCCCGCCCG CCGCCGCCCC
  CTCTGCCCAG TTACCCTCTC TGCAGACAGC TCCACTTTCC TGTCGCCTGT GGCTGCAGAA
  TCTTCCCCCA GTCTCCCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss360265601	MGP_WTSI_3_152059825	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs253263520					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265601	MGP_WTSI_3_152059825	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13950	CpG island 13950	within coordinates
Rr77388	regulatory region 77388	within coordinates
Tssr32410	transcription start site region 32410	1372 bp downstream
Tssr32411	transcription start site region 32411	802 bp downstream
Tssr32412	transcription start site region 32412	779 bp downstream
Tssr32413	transcription start site region 32413	467 bp downstream
Tssr32414	transcription start site region 32414	159 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	within coordinates