rs253266228 SNP Detail

Summary

• ID
  rs253266228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138800846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATCTG ACACCCTCTT
  CATTCATATG TGTATATATA TATATATATA TATATATATA TATATATGGT TTGTTTTTTT
  TTGAGACAGG GTTTCTCTGT GTAGCCCTAG CTGTCCTGGA ACTCACTTTG TAGACCAGGC
  TGGCCTCGAA CTCAGAAATC TGCCTGCCTC TGCCTCCCGA GTGCTGGGAT TAAAGGCGTG
  Y
  GCCACCACGC CCGGCTAATT TTCTTTAAAT ATTAAATCTT TCACAAAAAA AAAGGAAAAA
  AAGAAAAATT TATTCATTAT TTCAAATAAG GCAAGACATG GCTCAGCTAG CACTGGCCAT
  TGGACAAAAC CTGCCCATCT TCAGATGAGC AGCACAGAGC AGGGACAGGC TGTCTGGGAG
  CTTGTGCCAG ATTTTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373380587	MGP_WTSI_7_146406829	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253266228					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373380587	MGP_WTSI_7_146406829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138800846 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Rr657518	regulatory region 657518	1600 bp distal
Rr657519	regulatory region 657519	290 bp distal
Rr657520	regulatory region 657520	860 bp proximal
Tssr69706	transcription start site region 69706	311 bp downstream