rs253269545 SNP Detail

Summary

• ID
  rs253269545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTAAAG AAATATTTAG
  TCTTTAGTAG GTCAAAAGGT CAGACACTGA ATGTCATCTC TTTGTAACAC ACAGGTAGCA
  GGTGAGAAGG GATAAAGGTC TTCACTGCTA CTGTTGCCAA TGGCAACAAG GATCAGAAGC
  CACGGAACAC GCCCACCCCC TCCCCCACCC CCTCCCCGAC CCAGGTAAAT AGGAGCTGAA
  R
  CTAGTAATAG AAGCTTACAG AAATACTGGG GAGTCTTTCC GTGCACAGGT ATGGAAAGGG
  CCCAGAATAT ATTAACTGAA AAAAAAAAAA AACCACAAAC TGTAAATTCC AGAAAAGGTC
  TGTGCTTTCC TTTCCTGGAA GAAGACAGAA CCACACGATC CCGCAGAATA GTGTCAGTCC
  ACACGCGCAA AAAGCCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378625862	MGP_WTSI_9_98324448	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253269545					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378625862	MGP_WTSI_9_98324448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	635 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	435 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	1667 bp distal
Rr685256	regulatory region 685256	1058 bp distal
Rr685257	regulatory region 685257	900 bp distal
Tssr2984	transcription start site region 2984	1054 bp upstream
Tssr86646	transcription start site region 86646	750 bp upstream
Tssr86647	transcription start site region 86647	833 bp upstream
Tssr86648	transcription start site region 86648	893 bp upstream
Tssr86649	transcription start site region 86649	930 bp upstream
Tssr86650	transcription start site region 86650	1277 bp upstream
Tssr86651	transcription start site region 86651	1459 bp upstream