rs253270057 SNP Detail

Summary

• ID
  rs253270057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:104081622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCAATC TCGGTTTAAA
  TCGCTGTCGT GTGTAAGTTT TACTAATTAA AAAACCCCCG AACCACTAAG CAAAGCGGAA
  GCCCCAAAGC ACGGTTCAGC CACAGATGTT AATTCAAAGC TAAACCAGGA TGGTTCGTTA
  CCTCGTGCGG ATTGGAAGCA CCAGGAGCAG CGCCACGAGC AGGGAACCTC CTTCCCAGGT
  Y
  GTCAACTGCC CTAGGGAGCT TGCGGCTCTC AGCAGGCGTC CAGCTGCTCC TAAACAGGCC
  TCTCGCAACT GAATGCAGCT CTGGCTCTGA CAAAAGACCG AGAGAATGCC AGGCAGCGGA
  TCCTCAGCAG CTTGAGCGGG GTCTTTGCTG TCCCCAGACA AGTACTTTTA TTCATTCGGT
  CCCTTCCCAG CATCAATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392314152	MGP_WTSI_14_104243403	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253270057					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392314152	MGP_WTSI_14_104243403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:104081622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6819	CpG island 6819	within coordinates
Ednrb	endothelin receptor type B	within coordinates
Gm35197	predicted gene, 35197	within coordinates
Rr407	regulatory region 407	within coordinates
Rr390089	regulatory region 390089	within coordinates
Rr497067	regulatory region 497067	501 bp distal
Rr497068	regulatory region 497068	within coordinates
Rr497069	regulatory region 497069	206 bp proximal
Tssr130119	transcription start site region 130119	1114 bp upstream
Tssr130120	transcription start site region 130120	1031 bp upstream
Tssr130121	transcription start site region 130121	702 bp upstream
Tssr130122	transcription start site region 130122	635 bp upstream
Tssr130123	transcription start site region 130123	585 bp upstream
Tssr130124	transcription start site region 130124	553 bp upstream
Tssr130125	transcription start site region 130125	483 bp upstream
Tssr130126	transcription start site region 130126	471 bp upstream
Tssr130127	transcription start site region 130127	358 bp upstream
Tssr130128	transcription start site region 130128	7 bp upstream
Tssr130129	transcription start site region 130129	1 bp downstream
Tssr130130	transcription start site region 130130	22 bp downstream
Tssr130131	transcription start site region 130131	49 bp downstream
Tssr130132	transcription start site region 130132	60 bp downstream
Tssr130133	transcription start site region 130133	82 bp downstream
Tssr130134	transcription start site region 130134	114 bp downstream
Tssr130135	transcription start site region 130135	128 bp downstream
Tssr130136	transcription start site region 130136	158 bp downstream
Tssr130137	transcription start site region 130137	205 bp downstream
Tssr130138	transcription start site region 130138	234 bp downstream
Tssr130139	transcription start site region 130139	262 bp downstream