rs253284009 SNP Detail

Summary

• ID
  rs253284009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34419922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CCCTCCCTCC TCTCCTCCCC
  W
  CCCTCCTCTC CTCCCTCCGC CCTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919226331	MGP_WTSI_8_33929894	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	T	A	T	T	T	T	A	A	T	T	T	T	T	A	A	A	T	A	T	T	A	T	T	A	A	A	T	T	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253284009					SNP	A	T	A	A	T	A	T	T	T	T	A	A	T	T	T	T	T	A	A	A	T	A	T	T	A	T	T	A	A	A	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919226331	MGP_WTSI_8_33929894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34419922 () rs orientation: forward

Symbol	Name	Function Class
9530006C21Rik	RIKEN cDNA 9530006C21 gene	1125 bp upstream
Cpgi20240	CpG island 20240	within coordinates
Gm64370	predicted gene, 64370	1447 bp upstream
Rbpms	RNA binding protein gene with multiple splicing	mRNA-UTR
Rr661902	regulatory region 661902	100 bp distal
Rr661903	regulatory region 661903	within coordinates
Rr661904	regulatory region 661904	957 bp proximal
Rr661905	regulatory region 661905	1856 bp proximal
Rr661906	regulatory region 661906	1934 bp proximal
Tssr80881	transcription start site region 80881	78 bp upstream
Tssr80882	transcription start site region 80882	39 bp downstream
Tssr80883	transcription start site region 80883	84 bp downstream