rs253291219 SNP Detail

Summary

• ID
  rs253291219
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:16109714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTAGG ATTCAGATTC
  CTATCTGGAG ATAAGGAGGA CAGTTCCGTC CACAGATCCC TCAGTAACCC CCAGAGAGCC
  AGTGACAATC CTTTCTCTTC CCTAGTAAAG AGCATCCCAT CTTCTAAGAT GGATCTTGGG
  TCAGAGGCCA CTCGAGGCAG CTTCTTCCCA ATGGCGTTTT AGAAATAGGA AAGGGCAGCC
  S
  GGCTGCAGAG AGGCCCGGAG CGCAGCGCGT GGGCTCCCGG CAGGGCTCCC GCAGCGCCAG
  CGGCCAGAGG GCAGGCCGAG GCCGCCATAT TCTCGCCGAC CACGCCCCGG CAGCCCAGCG
  GCAGCCGAAG GTCGGTGTCC GCCTGCCGGA CCCGCTCCAA CGGCCGTGAC CGCCGCGCCG
  GAGCTCGCAC AGAGGGAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss401853769	MGP_WTSI_19_16206840	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253291219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853769	MGP_WTSI_19_16206840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16109714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	within coordinates
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	481 bp upstream
Rr544688	regulatory region 544688	1092 bp distal
Rr544689	regulatory region 544689	within coordinates
Rr544690	regulatory region 544690	250 bp proximal
Rr544691	regulatory region 544691	329 bp proximal
Rr544692	regulatory region 544692	492 bp proximal
Tssr155379	transcription start site region 155379	312 bp upstream
Tssr155380	transcription start site region 155380	396 bp upstream
Tssr155381	transcription start site region 155381	424 bp upstream
Tssr155382	transcription start site region 155382	462 bp upstream
Tssr155383	transcription start site region 155383	772 bp upstream
Tssr155384	transcription start site region 155384	951 bp upstream