rs253292858 SNP Detail

Summary

• ID
  rs253292858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50582757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACAACT TGGTATTAGG
  AGCTCCTTAA CCTGGTGCAT ATACATATGT ATAAACCATA CATACATACA TGAACATACA
  TATACACATA TATGCATGTG TTCTTTTTCT TCCCTTTTAT TCTATCTATT CATCATATAT
  CATTTATCCT TTTTCAACAT ACATCTCTCT CTCTCTCTGT CTCTCTCTCT CTCTATATAT
  M
  TATATATATA TTTGTCATAA TTTCTTCCCT GATATCAGAG CATGTGTGGC CCAGCAGTGA
  CTATGAAACT TAGAGGTGGT TTCCTAGCAT CTTATAAAAA GGAGGCAGTG ACATTTGGGA
  GAAGGGGTTT CTGGCAACCT CTTGGAATTC TGGTAGCAAC ATGATGAGGA AGTAAGTAAC
  CCTGCCCGGA TACAGGATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320289746	CHEV_2_50548265	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253292858					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50582757 () rs orientation: forward

Symbol	Name	Function Class
Rr556758	regulatory region 556758	1663 bp distal
Rr556759	regulatory region 556759	1067 bp proximal