rs253301457 SNP Detail

Summary

• ID
  rs253301457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAGTCCA GACATACAGC
  TTCATCTCAC TCTAAACCCC CTCCCTCCCC GCTCTCCTCC CTCCTCCTAC ATTTCCCTTT
  CCCCAGCCTC TTATGTAGCC CAGGCTAGCT TCAAACTCAC TATTATCGTC TGGTGATCCT
  CTAGCCTTCA CCTTCTAATG GCTGGGATTA CAGGCCCACA GCACCACACT TGGGAACCAA
  R
  CACAGTCCTT TTCAAATGAT GGGGCAGGTA CTCTTCCAAC CGAGCTACAT CTATAAGAAC
  CAACTCCTTT ATCTGCCAGA ATAGATAATT TTCCTTATAA ATAGAAAGAG CAGCTGGAAA
  TTCTAAATAG ATTATAGATG CCTTTAGTAT CTAAAAAAAA AAAAAAAGCT GGTTATTTTA
  CTTAATTTGG GCTTTTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235255	MGP_WTSI_6_48998972	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253301457					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235255	MGP_WTSI_6_48998972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025907 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56343	transcription start site region 56343	1674 bp downstream
Tssr56344	transcription start site region 56344	1650 bp downstream
Tssr56345	transcription start site region 56345	1631 bp downstream
Tssr56346	transcription start site region 56346	1578 bp downstream
Tssr56347	transcription start site region 56347	1560 bp downstream
Tssr56348	transcription start site region 56348	1537 bp downstream
Tssr56349	transcription start site region 56349	1216 bp downstream
Tssr56350	transcription start site region 56350	1187 bp downstream
Tssr56351	transcription start site region 56351	1160 bp downstream
Tssr56352	transcription start site region 56352	1141 bp downstream
Tssr56353	transcription start site region 56353	1073 bp downstream
Tssr56354	transcription start site region 56354	1059 bp downstream
Tssr56355	transcription start site region 56355	1035 bp downstream
Tssr56356	transcription start site region 56356	1017 bp downstream
Tssr56357	transcription start site region 56357	1005 bp downstream
Tssr56358	transcription start site region 56358	987 bp downstream
Tssr56359	transcription start site region 56359	956 bp downstream
Tssr56360	transcription start site region 56360	909 bp downstream
Tssr56361	transcription start site region 56361	909 bp upstream
Tssr56362	transcription start site region 56362	1137 bp upstream
Tssr56363	transcription start site region 56363	1424 bp upstream
Tssr60849	transcription start site region 60849	1611 bp upstream
Tssr60850	transcription start site region 60850	1558 bp upstream
Tssr60851	transcription start site region 60851	1096 bp upstream
Tssr60852	transcription start site region 60852	1067 bp upstream
Tssr60853	transcription start site region 60853	1055 bp upstream
Tssr60854	transcription start site region 60854	1038 bp upstream
Tssr60855	transcription start site region 60855	993 bp upstream
Tssr60856	transcription start site region 60856	966 bp upstream
Tssr60857	transcription start site region 60857	865 bp upstream
Tssr60858	transcription start site region 60858	1466 bp downstream
Tssr60859	transcription start site region 60859	1508 bp downstream
Tssr60860	transcription start site region 60860	1522 bp downstream
Tssr60861	transcription start site region 60861	1540 bp downstream