rs253304138 SNP Detail

Summary

• ID
  rs253304138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTTCT TGTTGCATTT
  GTTAGAGAAT TGATCTGTAC AGTCTAAAAA GAGGTCTTTC AGGTTATGGC AAGACCATCA
  GACAATGCTG TGGACTTTTA GCAATGGGAA CAAGTCATTT TACTTATGTC CCAGTAATAC
  ATACATGTGC AGTCCTTCTG ATGCCTGATA GATATTTTCT TATGTTGGAT TTTGGTTGTT
  R
  TTACATTCAC TCTTGTTCTT CTTCATGCAT GTAAGCCATG TCCCTTGTAT TTCCTTGCAC
  TTAGTCCAGA GGACTTATTT CTGGCATCTC ACAAATCCAA GGCATACTGT AGAAACAGGG
  TATATCATTC CAGTTCTTCC TGGAGTTTGA AGAGTCCCTT ATGGTGGCAC AGTCCTCCAC
  CAAAACTATA TTGTTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922410	MGP_WTSI_6_123233497	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253304138					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922410	MGP_WTSI_6_123233497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260438 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	699 bp downstream
Tssr58809	transcription start site region 58809	62 bp downstream
Tssr58810	transcription start site region 58810	37 bp downstream
Tssr58811	transcription start site region 58811	within coordinates
Tssr63019	transcription start site region 63019	1907 bp upstream
Tssr63020	transcription start site region 63020	975 bp upstream
Tssr63021	transcription start site region 63021	897 bp upstream
Tssr63022	transcription start site region 63022	858 bp upstream
Tssr63023	transcription start site region 63023	803 bp upstream
Tssr63024	transcription start site region 63024	705 bp upstream
Tssr63025	transcription start site region 63025	673 bp upstream
Tssr63026	transcription start site region 63026	652 bp upstream
Tssr63027	transcription start site region 63027	614 bp upstream
Tssr63028	transcription start site region 63028	589 bp upstream
Tssr63029	transcription start site region 63029	561 bp upstream
Tssr63030	transcription start site region 63030	505 bp upstream
Tssr63031	transcription start site region 63031	475 bp upstream
Tssr63032	transcription start site region 63032	444 bp upstream
Tssr63033	transcription start site region 63033	430 bp upstream
Tssr63034	transcription start site region 63034	404 bp upstream
Tssr63035	transcription start site region 63035	389 bp upstream
Tssr63036	transcription start site region 63036	322 bp upstream
Tssr63037	transcription start site region 63037	289 bp upstream
Tssr63038	transcription start site region 63038	264 bp upstream
Tssr63039	transcription start site region 63039	196 bp upstream
Tssr63040	transcription start site region 63040	152 bp upstream
Tssr63041	transcription start site region 63041	105 bp upstream
Tssr63042	transcription start site region 63042	85 bp upstream
Tssr63043	transcription start site region 63043	68 bp upstream
Tssr63044	transcription start site region 63044	33 bp upstream
Tssr63045	transcription start site region 63045	34 bp downstream
Tssr63046	transcription start site region 63046	53 bp downstream
Tssr63047	transcription start site region 63047	76 bp downstream
Tssr63048	transcription start site region 63048	104 bp downstream
Tssr63049	transcription start site region 63049	119 bp downstream
Tssr63050	transcription start site region 63050	143 bp downstream
Tssr63051	transcription start site region 63051	195 bp downstream
Tssr63052	transcription start site region 63052	1708 bp downstream
Tssr63053	transcription start site region 63053	1818 bp downstream
Tssr63054	transcription start site region 63054	1985 bp downstream