rs253311197 SNP Detail

Summary

• ID
  rs253311197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53931425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAATAC TCTACACACA
  GAGGCAAATC AAAGCCAAAC CCTCAGCTTG ACAGGTGGGA TGGACTCTAC TAGTGACAGG
  AGGCGCCGGC ACATGGAGCT GCGTCTGAGA ACCCAGTACT TACACAGTCA GTCAGGCCTC
  CAGTCTAACT TCTGGTTTGC ATGAAATAAG AAAAGGAATC CCTTTCCAAC AATACCTCTG
  Y
  GATGACTTCT TAAAAATGTC AGTGTCGCAG AGGGGAAGAC GATCTAAAGT TCTAAGGTGG
  CAATGTCCAT GTATAATACA AAACTTTGAC AGGAGTTTGA TTTATATATT CTCTGTATTC
  TGTTTTACAA AATTGCCACT TTTCTTGGTT GTAAGAATAC TGTATTCTGC AGATTCTCAA
  CTTCGAAATT CTTAGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402802483	MGP_WTSI_19_54017484	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253311197					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402802483	MGP_WTSI_19_54017484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53931425 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	within coordinates
Cpgi11070	CpG island 11070	860 bp proximal
Rr394562	regulatory region 394562	within coordinates
Rr549683	regulatory region 549683	1546 bp distal
Rr549684	regulatory region 549684	488 bp proximal
Rr549685	regulatory region 549685	897 bp proximal
Rr549686	regulatory region 549686	1176 bp proximal
Rr549687	regulatory region 549687	1323 bp proximal
Rr549688	regulatory region 549688	1456 bp proximal
Rr549689	regulatory region 549689	1897 bp proximal
Shoc2	Shoc2, leucine rich repeat scaffold protein	1312 bp upstream
Tssr5553	transcription start site region 5553	1265 bp downstream
Tssr157049	transcription start site region 157049	1069 bp upstream
Tssr157050	transcription start site region 157050	1846 bp upstream
Tssr157051	transcription start site region 157051	1876 bp upstream
Tssr159836	transcription start site region 159836	1171 bp downstream
Tssr159837	transcription start site region 159837	1239 bp downstream
Tssr159838	transcription start site region 159838	1442 bp downstream
Tssr159839	transcription start site region 159839	1627 bp downstream