rs253315329 SNP Detail

Summary

• ID
  rs253315329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93438532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTGAA GTTGCTCACA
  TCCAGTGATT TGCCAGCTGA TATTGGTTGT CACTTTCACA CCTCAACACA ATTCAAACAT
  ATCCTTTACC TTTGATTTTT TTCTTTTCTC TTGACATGTA AAAGCCACAA ATTGGCCTTT
  TGTTTAAAGA ATTTTATATT TTCAATTGAC TTCTTTTTTC CTGCTTATTG AAAGTAGGCA
  R
  AGTAGAACCA GGGGACGTCT GACAACAATG GCATTCATAA ACCAGCTACA CACCGCATGA
  TTTCTTCTCT TCTTTCCATA TGCCTATTTA GTTTGTATAA TTGGATATAC CTTTTTTTTT
  ACTTTATTAA AATACTGAAT TTATTTCATA TGTATATTTT TGTCTCCATG AAATTTCCAC
  ATCTGACCAC TACTATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324742170	CHEV_14_93600315	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253315329					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93438532 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1004 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1010 bp downstream
Tssr129947	transcription start site region 129947	1037 bp downstream
Tssr129948	transcription start site region 129948	1129 bp downstream