rs253335980 SNP Detail

Summary

• ID
  rs253335980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAACCTC TGACACCAGG
  GACTTTGCAA GATGCACGAG CCCACTCTAC CCTCCAAGCC CGGGCTTTAA GCCCAGGGCG
  CAAGGAGACA TCCCAACCCA ACCAGGATCC ATGTCAGTGA GGTCCTTTCT GTAGAGGTGC
  CAGTAAATGC AGTTGGGGAC AGTTGAGCCA AGGGGTCCGG ATCGGAAAGT TGAGGTTCAG
  M
  CCCCCAAACG GGTCGACGGC TTTGGAAGAA GCTGAGCCGA TCAGGAGGCA GGCAGGCAAC
  AGCAGTGAAA TGAACCTCGT TATACAGATG CCTGGGGGAT GGGGAGCCTT GAGGAGGGGG
  CCCAAGGGGG AGCGTACCCC GCCTCCAGGC ACCCTGTCCC GTAGTACAGC TTTAAAATCC
  TGAGAAGTTT GTCATAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390637187	MGP_WTSI_14_29317510	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253335980					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637187	MGP_WTSI_14_29317510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	332 bp proximal
Rr406804	regulatory region 406804	1789 bp distal
Rr489628	regulatory region 489628	within coordinates
Rr489629	regulatory region 489629	733 bp proximal
Rr489630	regulatory region 489630	923 bp proximal
Tssr124778	transcription start site region 124778	241 bp upstream
Tssr124779	transcription start site region 124779	310 bp upstream
Tssr124780	transcription start site region 124780	354 bp upstream
Tssr124781	transcription start site region 124781	412 bp upstream
Tssr124782	transcription start site region 124782	472 bp upstream
Tssr124783	transcription start site region 124783	1139 bp upstream
Tssr124784	transcription start site region 124784	1171 bp upstream
Tssr124785	transcription start site region 124785	1218 bp upstream
Tssr124786	transcription start site region 124786	1282 bp upstream
Tssr124787	transcription start site region 124787	1435 bp upstream
Tssr124788	transcription start site region 124788	1457 bp upstream
Tssr124789	transcription start site region 124789	1493 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	426 bp upstream