rs253339459 SNP Detail

Summary

• ID
  rs253339459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAATCT AGGGGTAACG
  TTTCCCTGAG GGGTAGGTGC CACTTCCGGG ATGATCCTGG AAATGGTACT CAAAAGGGGA
  GATCAGACTT CAAGGAAATG GATCCTGATG GTTGATCATG GCCTGCCAGA AACCAAACTC
  CTCTCCCTCC CAAAGAAAGC CTCAGGTGCC TCCTCCTCAA CTCCAGTGCT TCCGAGTCAA
  Y
  CCAGATCGGG CCTTGGAGAA TGAGCAAGAG AGCTAGGCAG GCCACACAGC CAGGCAGCAA
  GAATCTCCCA GGCTGTGCTC TGCCTGGGCC CAGCTCTGCC AGCCTTCTTT CTACTTTCAC
  TACTGGGAAG AAATGAGTAA GAAGTCGGAG ATAGTTCTGT CTTAGAAACA AACTCCCTTT
  TCTCTTGCCA CTCAGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377445699	MGP_WTSI_9_45762200	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253339459					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377445699	MGP_WTSI_9_45762200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865415 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	within coordinates
Cpgi21698	CpG island 21698	316 bp proximal
Rr678012	regulatory region 678012	6 bp distal
Rr678013	regulatory region 678013	850 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1210 bp upstream
Tssr89292	transcription start site region 89292	1233 bp upstream
Tssr89293	transcription start site region 89293	433 bp upstream
Tssr89294	transcription start site region 89294	849 bp downstream
Tssr89295	transcription start site region 89295	1053 bp downstream
Tssr89296	transcription start site region 89296	1079 bp downstream
Tssr89297	transcription start site region 89297	1109 bp downstream
Tssr89298	transcription start site region 89298	1136 bp downstream
Tssr89299	transcription start site region 89299	1162 bp downstream