rs253340361 SNP Detail

Summary

• ID
  rs253340361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCTGCA TGAGCTCTAA
  CATTAGGAAA GTTGGCAAGA CTCACAGTGC CCTGGGGCTC CTCCCTTATA CTTGATTTAA
  AGGGACACCT AAGTAACTAC ATAATAATTT TGGATTTTAG CCATCACCTG ATTTTCCTAT
  CAATAAAATG TATTTGGTGA ATATTATTCC TAATCAGATG TGAAATGACT TCCTCTTATC
  R
  TCTTTCTGTC CTCTCAGGGT AGCCCTTTAC AGTGAGCTTC TTTAACCACA GCAGGCCTAG
  CCCTTTGTCC CACAAATGAG TTTGCCTAGG GGTAAAAATG TGGGTGAGAA AGGCACAGCT
  TGGAGCGATC CCAGCTCCCC TCTGGGCTCC CAGTTTCCGT GTTCACTCTT TATTTTTTTT
  TTTTTCCACG AATAGTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375074761	MGP_WTSI_8_71406440	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253340361					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375074761	MGP_WTSI_8_71406440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	917 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664456	regulatory region 664456	940 bp distal
Rr664457	regulatory region 664457	439 bp distal
Rr664458	regulatory region 664458	585 bp distal
Rr664459	regulatory region 664459	20 bp proximal
Tssr77601	transcription start site region 77601	1977 bp downstream
Tssr77602	transcription start site region 77602	1899 bp downstream
Tssr77603	transcription start site region 77603	1869 bp downstream
Tssr77604	transcription start site region 77604	1824 bp downstream
Tssr77605	transcription start site region 77605	1811 bp downstream
Tssr77606	transcription start site region 77606	1806 bp upstream
Tssr77607	transcription start site region 77607	1872 bp upstream
Tssr77608	transcription start site region 77608	1893 bp upstream
Tssr77609	transcription start site region 77609	1928 bp upstream
Tssr77610	transcription start site region 77610	1999 bp upstream