rs253345297 SNP Detail

Summary

• ID
  rs253345297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126048399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAATTC CTGCAATCCT
  TATAATGCCT GCCCTGCATA GACTGGCAGT GCCAAGGCCT GCTGCAAAAA GCCTGCCGAG
  TCAGAAAGTG ATGGCACACA CCTCTGATCC CAGCACTTGG GAGGCATAGG CAGGTAGATC
  TCTGTGAATC CGAGGCCAGC CTGATCTACA AAGTGAGTTT CTGGACAGCC AGAGCTGTTA
  Y
  ACAGAGAAAC CCTATCTCAA AAAAAAAAAA AAAAAAAAAA AAACAGACTG ACTGACTGAC
  TGACTGACTG ATTTAAAAAA GGAGAGCTGG ATCTGGGTGT GGTGGGTACA CCTGAGGTTC
  CAGCACCCAG GAGGTCAAGA GGAATTCATG AATTCCTGAC CAGGGAGGGC CAGCCCTGGC
  TGCATCATGA ATTCACGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068783	MGP_WTSI_7_133592741	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253345297					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068783	MGP_WTSI_7_133592741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126048399 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	1587 bp upstream
Tssr69023	transcription start site region 69023	1313 bp downstream
Tssr74670	transcription start site region 74670	1753 bp upstream
Tssr74671	transcription start site region 74671	1732 bp upstream
Tssr74672	transcription start site region 74672	1715 bp upstream
Tssr74673	transcription start site region 74673	1576 bp upstream
Tssr74674	transcription start site region 74674	1548 bp upstream
Tssr74675	transcription start site region 74675	1534 bp upstream
Tssr74676	transcription start site region 74676	1325 bp upstream
Tssr74677	transcription start site region 74677	1282 bp upstream
Tssr74678	transcription start site region 74678	1261 bp upstream
Tssr74679	transcription start site region 74679	1241 bp upstream
Tssr74680	transcription start site region 74680	1223 bp upstream
Tssr74681	transcription start site region 74681	1197 bp upstream
Tssr74682	transcription start site region 74682	1186 bp upstream
Tssr74683	transcription start site region 74683	983 bp upstream
Tssr74684	transcription start site region 74684	881 bp upstream
Tssr74685	transcription start site region 74685	845 bp upstream
Tssr74686	transcription start site region 74686	589 bp upstream
Tssr74687	transcription start site region 74687	553 bp upstream
Tssr74688	transcription start site region 74688	468 bp upstream
Tssr74689	transcription start site region 74689	397 bp upstream
Tssr74690	transcription start site region 74690	15 bp downstream
Tssr74691	transcription start site region 74691	58 bp downstream
Tssr74692	transcription start site region 74692	925 bp downstream
Tssr74693	transcription start site region 74693	951 bp downstream
Tssr74694	transcription start site region 74694	1074 bp downstream
Tssr74695	transcription start site region 74695	1275 bp downstream