rs253348793 SNP Detail

Summary

• ID
  rs253348793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGAGTAGA GTTCTGCAGA
  GTCCCCCTTT TTTCCCCCTC AGAGAGTTTA CATACTGCTC CAGAAGGAAG AATTATTATT
  TTCTGGCTAG CTACTAAGGT TGTGAGTGTT GTTTCCTGTC GGGGAAGCAG AGCCACTCTG
  GATCCTAAGC GTTGGCTTGA GCAGAGCTGC GGAGGTGGCT CCAGTTTCCA AAGATGCTCC
  K
  TGGGCTGTGG GAAGGAGGCC CGGGGGAACG GGCACCCTCT CTCAGTGGTG CAGCGTTTAA
  AACTACCTTT GTTCTTAGCT GGAAGCTGTA GAAGCATCTG ATTGGACTTG CTCATTTTCA
  CAGATGGGAA AGTGAGACCC AGCAGGGTGA GATCAGTTTC CTTACAATTC TGATGGCCAA
  TGAGAGGCAG AACCAGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401317881	MGP_WTSI_18_78120907	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253348793					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401317881	MGP_WTSI_18_78120907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2			Intron
				mRNA-UTR
Rr541209	regulatory region 541209			1928 bp distal
Rr541210	regulatory region 541210			854 bp proximal
Tssr152066	transcription start site region 152066			20 bp upstream
Tssr152067	transcription start site region 152067			52 bp upstream
Tssr152068	transcription start site region 152068			82 bp upstream
Tssr152069	transcription start site region 152069			183 bp upstream
Tssr152070	transcription start site region 152070			298 bp upstream
Tssr152071	transcription start site region 152071			329 bp upstream
Tssr152072	transcription start site region 152072			350 bp upstream
Tssr152073	transcription start site region 152073			383 bp upstream
Tssr152074	transcription start site region 152074			412 bp upstream
Tssr152075	transcription start site region 152075			432 bp upstream